Editing QUEUES for CARLES BO group (section)

== SENDING CALCULATIONS: ==

Until a 'qs' wrapper will be made you must to conform a .sub script manually and send it using 'qsub' command.

Below these lines you have an example of .sub script where you must substitute the bold variables:
   
----
''''$JOBNAME''''     identify the job in the cluster queue.

''''$QUEUE_NAME''''  identify the queue where you are sending the calculation 
* qconf -sql

''''$PE_NAME'''''    identify the name of the Parallel Environment
* qconf -sq $QUEUE_NAME | grep pe_list

''''$N_PROC''''      identify the requested number of processors 

''''$ADFVERSION''''  identify the version of ADF that you can use 
* adf2007.01 | adf2008.01 | adf2009.01
''''$CALCULATION'''' paste your calculation script
----
      



 #!/bin/bash                                                        
 #$ -N '''$JOBNAME'''                                                     
 #$ -cwd                                                            
 #$ -masterq '''$QUEUE_NAME'''                                             
 #$ -pe '''$PE_NAME $N_PROC'''
 
 #Set an environment variable for the location of MPI
 #$ -v MPIR_HOME=/usr/local/adf2008.01/bin/hpmpi     
                                                    
 #The number of slots (CPUs) grid engine allocates   
 #is set as the variable $NSLOTS                     
 echo "Got $NSLOTS slots."                           
 
 export PATH=$PATH                                              
                                                               
 export TMPDIR=/scratch                                         
 export ADFHOME=/usr/local/'''$ADFVERSION'''                           
 export ADFBIN=$ADFHOME/bin
 export ADFRESOURCES=$ADFHOME/atomicdata
 export SCMLICENSE=$ADFHOME/license
 export SCM_USETMPDIR=yes
 export SCM_NODOMAINCHECK=yes
 export MPIDIR=$ADFHOME/bin/hpmpi
 export PATH=$PATH:$MPIDIR/bin:$TMPDIR
 export SCMWISH=""
 
 $ADFBIN/adf << eor
 
 '''$CALCULATION'''
 
 echo QUEUE $QUEUE
 echo PE $PE
 echo NSCM $NSCM
  echo $PWD
 cd /scratch
 ls -lR
 rm -rf *