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== Recommendations when using Macromodel == * Use a "nice" Force Field i.e. MM3 * Chose a "nice" CSearch Method, i.e. LowMode sampling * Use '''Comparison Atoms''' tool to avoid having repeated structures. Default options use all atoms, select only those that are really important (the skeleton of the structure). Changes on the rest of atoms will induce changes on the skeleton. i.e for Ph3C-CH2-CPh3 the skeleton will be 1 carbon of each Ph (the one bonded to the sp3 carbon) and the central atoms C-C-C. * Have a LOT of patience...
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