Editing VMD (section)

== Supported Molecular File Formats ==

 '''Molecule Coordinate/Structure File'''
 
 AMBER 4-6 structure file(.parm) 
 AMBER 7-9 structure file(.prmtop, .parm7) 
 AMBER 7-9 restart file(.rst7) 
 Babel file translator plugin 
 Biograf structure files (.bgf) 
 Insight II/Discover coordinate file (.car) 
 CHARMM coordinate file (.crd) 
 CHARMM, CNS, NAMD, X-PLOR PSF structure file (.psf) 
 GAMESS log file (.log) 
 Gromos 87, Gromacs structure file (.gro) 
 Gromos 96, Gromacs coordinate and trajectory (.g96) 
 NAMD Restart file (.namdbin) 
 Insight II/Discover structure file (.mdf) 
 MMTK NetCDF structure reader (.nc) 
 Molden structure files (.molden) 
 PDB (Protein Data Bank) files (.pdb) 
 PQR (coordinate, charge, and radii) (.pqr) 
 SYBYL Mol2 structure files (.mol2) 
 Tinker coordinate and trajectory reader (.arc) 
 VASP atomic configurations (.POSCAR, .CONTCAR) 
 VMD XBGF structure files (.xbgf) 
 VTF structure files (.vsf, .vcf) 
 WebPDB (web-based PDB downloader) 
 XCrySDen, Quantum Espresso XSF/AXSF coordinate files (.axsf, .xsf) 
 XYZ coordinate files (.xyz)

 '''Molecular Dynamics Trajectory File'''
 
 AMBER 'binpos' trajectory reader (.binpos) 
 AMBER "CRD" trajectory reader (.crd, .crdbox) 
 AMBER NetCDF trajectory reader (.nc) 
 CHARMM, NAMD, X-PLOR "DCD" reader/writer (.dcd) 
 CPMD (CPMD trajectory) reader (.cpmd) 
 DLPOLY HISTORY file reader (.dlpolyhist) 
 Gromacs TRR/XTC reader (.trr, .xtc) 
 LAMMPS trajectory reader (.lammpstrj) 
 MMTK NetCDF trajectory reader (.nc) 
 VASP trajectories of ionic steps (.xml, .OUTCAR, .XCATCAR) 
 VTF trajectory files (.vtf) 
 XCrySDen, Quantum Espresso XSF/AXSF trajectory files (.axsf, .xsf) 
 XYZ trajectory files (.xyz) 

 '''Volumetric Data/Density/Potential Map'''
 
 Autodock Grid Map File reader (.map) 
 AVS Field File reader (.fld) 
 Biomocca volumetric occupancy map reader (.bmcg) 
 Brix format electron density map reader (.brix) 
 CCP4, MRC format electron density map reader (.ccp4, .mrc) 
 Data Explorer (DX) format volumetric grid (.dx) 
 Delphi, GRASP unformatted binary phimap reader (.grd, .phi) 
 Delphi, GRASP formatted ASCII phimap reader (.big) 
 Gaussian "cube" file reader (.cube) 
 Molecular Discovery, UHBD GRID map reader (.grid) 
 gOpenmol PLT format electron density map reader (.plt) 
 "O" DSN6 format electron density map reader (.ds6, .dsn6, .omap) 
 Situs volumetric grids (.sit, .situs) 
 SPIDER volumetric images (.spi, .spider) 
 UHBD potential maps (.uhbd) 
 VASP charge densities and electron localization functions (.CHGCAR, .ELFCAR, .LOCPOT, .PARCHG) 
 X-PLOR, CNS format electron density map reader (.cns, .edm, .xplor) 
 XCrySDen, Quantum Espresso XSF/AXSF trajectory files (.axsf, .xsf) 
 XtalView "fsfour" electron density map reader (.fs, .fs4) 
 Graphics Plugins
 GRASP surface file reader (.grasp, .srf) 
 MSMS surface file reader (.face, .vert) 
 Raster3D scene reader (.r3d) 
 STL solid model triangulated geometry files (.stl)