Monte Carlo Conformational Search: Difference between revisions

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New page: Here follows some useful tips when performing a Monte Carlo conformational search: * "man kann doch die Manual lesen" (German for "you can read the manual") * When selecting torsions to ...
 
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Here follows some useful tips when performing a Monte Carlo conformational search:
Here follows some useful tips when performing a Monte Carlo conformational search:


* "man kann doch die Manual lesen" (German for "you can read the manual")
* "man kann doch die Manual lesen" (German for "you can read the manual")


* When selecting torsions to vary, the second atom in the torsion specification must not be connected to a frozen atom
* Freeze the metal atoms as well as the atoms forming part of the first coordination sphere
 
* perform automatic set-up, do modifications afterwards 
 
* When selecting torsions to vary, the second atom in the torsion specification  
must not be connected to a frozen atom
 
* When varying torsions within a ring, use the ring-closure command RCA4
Remember that arg2 and arg3 in RCA4 must not be listed in any torsion specification

Latest revision as of 18:54, 16 February 2010

go back to Main Page, Computational Resources, Chemistry & More, Computational Codes, MACROMODEL


Here follows some useful tips when performing a Monte Carlo conformational search:

  • "man kann doch die Manual lesen" (German for "you can read the manual")
  • Freeze the metal atoms as well as the atoms forming part of the first coordination sphere
  • perform automatic set-up, do modifications afterwards
  • When selecting torsions to vary, the second atom in the torsion specification

must not be connected to a frozen atom

  • When varying torsions within a ring, use the ring-closure command RCA4

Remember that arg2 and arg3 in RCA4 must not be listed in any torsion specification