Your first project: Difference between revisions
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go back to [[Main Page]], [[Group Pages]], [[Núria López and Group]], | go back to [[Main Page]], [[Group Pages]], [[Núria López and Group]], [[VASP_beginners]] | ||
==First steps: | ==First steps: extensive literature review== | ||
* Make sure you master all the [[VASP_beginners|basics of DFT calculations in VASP]], the VASP documentation, and the content of our internal wiki relevant to your project. | * Make sure you master all the [[VASP_beginners|basics of DFT calculations in VASP]], the VASP documentation, and the content of our internal wiki relevant to your project. | ||
* Print 20-50 papers related to your project. Give priority to those recent, published in high-impact journals, and cover both theoretical and experimental ones. | * Print 20-50 papers related to your project. Give priority to those recent, published in high-impact journals, and cover both theoretical and experimental ones. | ||
| Line 7: | Line 7: | ||
* Sketch some ideas: What you can and cannot get from DFT (and related) simulations. What information will be useful to you. | * Sketch some ideas: What you can and cannot get from DFT (and related) simulations. What information will be useful to you. | ||
* Update your paper list each week, including at least one new paper. Keep reading throughout all your project. | * Update your paper list each week, including at least one new paper. Keep reading throughout all your project. | ||
* You have the responsibility of knowing the most recent advances in your field. Do take the literature review seriously. | |||
==Second phase: the objectives== | ==Second phase: the objectives== | ||
| Line 14: | Line 15: | ||
==Third phase: the paper== | ==Third phase: the paper== | ||
* Write a first draft of the paper, even a crude one, containing at least the objective, the methods, and a backbone of the discussion. | * Write a first draft of the paper, even a crude one, containing at least the objective, the methods, and a backbone of the discussion. Aim at clarity. Avoid circumlocution. | ||
* Include an early abstract and conclusions. | * Include an early abstract and conclusions. If you find later on that your initial thoughts were wrong, do not be afraid to strongly edit those sections. | ||
* Identify any potential gap in logic that would need to be filled, and cover it (Akin to [https://en.wikipedia.org/wiki/Feynman_Technique Feynman's technique]). | * Identify any potential gap in logic that would need to be filled, and cover it (Akin to [https://en.wikipedia.org/wiki/Feynman_Technique Feynman's technique]). | ||
* Select a target journal in the light of the expected impact. | * Select a target journal in the light of the expected impact. Adapt the Manuscript to the Journal's format early on. | ||
* Update your coworkers and collaborators on a regular basis. Mind uploading your draft into iciq's mysharepoint (for Word) or Overleaf (for LaTeX). | * Update your coworkers and collaborators on a regular basis. Mind uploading your draft into iciq's mysharepoint (for Word) or Overleaf (for LaTeX). | ||
* Use an automated reference manager. Recommended: Mendeley (Word) and Bibtex (LaTeX). | * Use an automated reference manager. Recommended: Mendeley (Word) and Bibtex (LaTeX). | ||
* Do all line art in Origin. Mind the [[Colour_codes]] standard in the group. | * Do all line art in Origin. Mind the [[Colour_codes]] standard in the group. | ||
* [[]] | * See recent group publications and adapt your style ([[Colour_codes|colours]], structures in [[Command_line_rendering_of_chemical_structures_in_Blender|Blender]] or [[Generate_figures|xcrysden]], nomenclature, etc.) to the group. | ||
* Upload all relevant structures into [https://iochem-bd.iciq.es/ iochem-BD]. Examples of automated uploads via command line can be found in this folder /home/rgarcia/upload (accessible only from tekla2): | |||
==Fourth phase: peer review== | ==Fourth phase: peer review== | ||
* Be humble when you write your [[Reply to reviewers]]. | * Be humble when you write your [[Reply to reviewers]]. Keep reviewing all previous steps. | ||
* Once you get your paper accepted, and before publication, contact the Scientific Communication department at ICIQ and prepare relevant notes. | |||
Latest revision as of 16:05, 13 September 2021
go back to Main Page, Group Pages, Núria López and Group, VASP_beginners
First steps: extensive literature review[edit]
- Make sure you master all the basics of DFT calculations in VASP, the VASP documentation, and the content of our internal wiki relevant to your project.
- Print 20-50 papers related to your project. Give priority to those recent, published in high-impact journals, and cover both theoretical and experimental ones.
- Read these papers (Seriously!). Highlight all information relevant to you. Start at least with the 20-25 you find more relevant.
- Sketch some ideas: What you can and cannot get from DFT (and related) simulations. What information will be useful to you.
- Update your paper list each week, including at least one new paper. Keep reading throughout all your project.
- You have the responsibility of knowing the most recent advances in your field. Do take the literature review seriously.
Second phase: the objectives[edit]
- Establish your research objectives in the light of the ideas you got from literature, your supervisor, and your colleagues.
- Plan which calculations you need to submit to cover these objectives.
- Plan how you want to process such data.
Third phase: the paper[edit]
- Write a first draft of the paper, even a crude one, containing at least the objective, the methods, and a backbone of the discussion. Aim at clarity. Avoid circumlocution.
- Include an early abstract and conclusions. If you find later on that your initial thoughts were wrong, do not be afraid to strongly edit those sections.
- Identify any potential gap in logic that would need to be filled, and cover it (Akin to Feynman's technique).
- Select a target journal in the light of the expected impact. Adapt the Manuscript to the Journal's format early on.
- Update your coworkers and collaborators on a regular basis. Mind uploading your draft into iciq's mysharepoint (for Word) or Overleaf (for LaTeX).
- Use an automated reference manager. Recommended: Mendeley (Word) and Bibtex (LaTeX).
- Do all line art in Origin. Mind the Colour_codes standard in the group.
- See recent group publications and adapt your style (colours, structures in Blender or xcrysden, nomenclature, etc.) to the group.
- Upload all relevant structures into iochem-BD. Examples of automated uploads via command line can be found in this folder /home/rgarcia/upload (accessible only from tekla2):
Fourth phase: peer review[edit]
- Be humble when you write your Reply to reviewers. Keep reviewing all previous steps.
- Once you get your paper accepted, and before publication, contact the Scientific Communication department at ICIQ and prepare relevant notes.