Your first project: Difference between revisions

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go back to [[Main Page]], [[Group Pages]], [[Núria López and Group]]  
go back to [[Main Page]], [[Group Pages]], [[Núria López and Group]], [[VASP_beginners]]


==First steps: The literature review==
==First steps: extensive literature review==
* Make sure you master all the [[VASP_beginners|basics of DFT calculations in VASP]], the VASP documentation, and the content of our internal wiki relevant to your project.  
* Make sure you master all the [[VASP_beginners|basics of DFT calculations in VASP]], the VASP documentation, and the content of our internal wiki relevant to your project.  
* Print 20-50 papers related to your project. Give priority to those recent, published in high-impact journals, and cover both theoretical and experimental ones.  
* Print 20-50 papers related to your project. Give priority to those recent, published in high-impact journals, and cover both theoretical and experimental ones.  
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* Sketch some ideas: What you can and cannot get from DFT (and related) simulations. What information will be useful to you.
* Sketch some ideas: What you can and cannot get from DFT (and related) simulations. What information will be useful to you.
* Update your paper list each week, including at least one new paper. Keep reading throughout all your project.  
* Update your paper list each week, including at least one new paper. Keep reading throughout all your project.  
* You have the responsibility of knowing the most recent advances in your field. Do take the literature review seriously.


==Second phase: the objectives==   
==Second phase: the objectives==   
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==Third phase: the paper==  
==Third phase: the paper==  
* Write a first draft of the paper, even a crude one, containing at least the objective, the methods, and a backbone of the discussion.  
* Write a first draft of the paper, even a crude one, containing at least the objective, the methods, and a backbone of the discussion. Aim at clarity. Avoid circumlocution. 
* Include an early abstract and conclusions. Do not be afraid to strongly edit those later on if your initial impressions were wrong.     
* Include an early abstract and conclusions. If you find later on that your initial thoughts were wrong, do not be afraid to strongly edit those sections.     
* Identify any potential gap in logic that would need to be filled, and cover it (Akin to [https://en.wikipedia.org/wiki/Feynman_Technique Feynman's technique]).   
* Identify any potential gap in logic that would need to be filled, and cover it (Akin to [https://en.wikipedia.org/wiki/Feynman_Technique Feynman's technique]).   
* Select a target journal in the light of the expected impact. Adopt the format of such a Journal early on.   
* Select a target journal in the light of the expected impact. Adapt the Manuscript to the Journal's format early on.   
* Update your coworkers and collaborators on a regular basis. Mind uploading your draft into iciq's mysharepoint (for Word) or Overleaf (for LaTeX).   
* Update your coworkers and collaborators on a regular basis. Mind uploading your draft into iciq's mysharepoint (for Word) or Overleaf (for LaTeX).   
* Use an automated reference manager. Recommended: Mendeley (Word) and Bibtex (LaTeX).  
* Use an automated reference manager. Recommended: Mendeley (Word) and Bibtex (LaTeX).  
* Do all line art in Origin. Mind the [[Colour_codes]] standard in the group.  
* Do all line art in Origin. Mind the [[Colour_codes]] standard in the group.  
* See recent group publications and adapt your style ([[Colour_codes|colours]], structures, [[Command_line_rendering_of_chemical_structures_in_Blender|Blender]], nomenclature) to the group.
* See recent group publications and adapt your style ([[Colour_codes|colours]], structures in [[Command_line_rendering_of_chemical_structures_in_Blender|Blender]] or [[Generate_figures|xcrysden]], nomenclature, etc.) to the group.
* Upload all relevant structures into [https://iochem-bd.iciq.es/ iochem-BD]. Examples of automated uploads via command line can be found in this folder /home/rgarcia/upload (accessible only from tekla2):


==Fourth phase: peer review==  
==Fourth phase: peer review==  
* Be humble when you write your [[Reply to reviewers]]. Keep reviewing all previous steps.  
* Be humble when you write your [[Reply to reviewers]]. Keep reviewing all previous steps.  
* Once you get your paper accepted, and before publication, contact the Scientific Communication department at ICIQ and prepare relevant notes.
* Once you get your paper accepted, and before publication, contact the Scientific Communication department at ICIQ and prepare relevant notes.

Latest revision as of 16:05, 13 September 2021

go back to Main Page, Group Pages, Núria López and Group, VASP_beginners

First steps: extensive literature review[edit]

  • Make sure you master all the basics of DFT calculations in VASP, the VASP documentation, and the content of our internal wiki relevant to your project.
  • Print 20-50 papers related to your project. Give priority to those recent, published in high-impact journals, and cover both theoretical and experimental ones.
  • Read these papers (Seriously!). Highlight all information relevant to you. Start at least with the 20-25 you find more relevant.
  • Sketch some ideas: What you can and cannot get from DFT (and related) simulations. What information will be useful to you.
  • Update your paper list each week, including at least one new paper. Keep reading throughout all your project.
  • You have the responsibility of knowing the most recent advances in your field. Do take the literature review seriously.

Second phase: the objectives[edit]

  • Establish your research objectives in the light of the ideas you got from literature, your supervisor, and your colleagues.
  • Plan which calculations you need to submit to cover these objectives.
  • Plan how you want to process such data.

Third phase: the paper[edit]

  • Write a first draft of the paper, even a crude one, containing at least the objective, the methods, and a backbone of the discussion. Aim at clarity. Avoid circumlocution.
  • Include an early abstract and conclusions. If you find later on that your initial thoughts were wrong, do not be afraid to strongly edit those sections.
  • Identify any potential gap in logic that would need to be filled, and cover it (Akin to Feynman's technique).
  • Select a target journal in the light of the expected impact. Adapt the Manuscript to the Journal's format early on.
  • Update your coworkers and collaborators on a regular basis. Mind uploading your draft into iciq's mysharepoint (for Word) or Overleaf (for LaTeX).
  • Use an automated reference manager. Recommended: Mendeley (Word) and Bibtex (LaTeX).
  • Do all line art in Origin. Mind the Colour_codes standard in the group.
  • See recent group publications and adapt your style (colours, structures in Blender or xcrysden, nomenclature, etc.) to the group.
  • Upload all relevant structures into iochem-BD. Examples of automated uploads via command line can be found in this folder /home/rgarcia/upload (accessible only from tekla2):

Fourth phase: peer review[edit]

  • Be humble when you write your Reply to reviewers. Keep reviewing all previous steps.
  • Once you get your paper accepted, and before publication, contact the Scientific Communication department at ICIQ and prepare relevant notes.