Adjust.sh: Difference between revisions

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The script ''adjust.sh'' prepares a .sub file, ready to be run on the queue you want.
The script ''adjust.sh'' prepares a .sub file, ready to be run on the queue you want.


'''Launching''': ''adjust.sh queue proc comp''  
'''Launching''': ''adjust.sh queue proc''  
                 ''queue'' is the type of processor where I want to run the calculation
                 ''queue'' is the type of processor where I want to run the calculation
                 Available options: c0 q0 c4m8 c8m24
                 Available options: c0 q0 c4m8 c8m24


                 ''proc'' is the number of processors
                 ''proc'' is the number of processors
               


                ''comp'' is where we are running the calculation
['''Example''']: you are in the directory ~/Trabajo/blabla and run adjust.sh q0 16
                 Available options: tekla1|tek1|t1 for tekla and tekla2|tek2|t2 for tekla2
                 ==> the scripts prepares a file called ''blabla.sub'' ready to be run with qsub on q0, 16 procs (tekla1).


'''Output file''': ''dir.sub'' (where ''dir'' is the directory where you are)
'''Output file''': ''dir.sub'' (where ''dir'' is the directory where you are)

Revision as of 13:39, 22 June 2010

go back to Main Page, Computational Resources, Scripts, Useful_scripts


The script adjust.sh prepares a .sub file, ready to be run on the queue you want.

Launching: adjust.sh queue proc

                queue is the type of processor where I want to run the calculation
                Available options: c0 q0 c4m8 c8m24
                proc is the number of processors
                

[Example]: you are in the directory ~/Trabajo/blabla and run adjust.sh q0 16

                ==> the scripts prepares a file called blabla.sub ready to be run with qsub on q0, 16 procs (tekla1).

Output file: dir.sub (where dir is the directory where you are)

Used files/subprograms: proto1.sub, proto2.sub



INSTALLATION STEPS

1) First of all, download the program:

      File:Adjust.tgz

and uncompress it.


2) As soon as you have done it, get this:

      File:MInv.tgz

uncompress it and compile it: g77 mInv.f -o x.mInv and put it in the directory you want (named, for simplicity, directory A).


3) CHANGE THE PATH THAT APPEARS IN LINE 12 of gv_vasp.sh

  /home/lbellarosa/src/complex/Cell  ===>  path of directory A

the path where you put your x.mInv program (i.e., /home/nlopez/Trabajo/directory A/x.mInv).


4) Now you can run the script typing:

      gv_vasp.sh file