Scripts for Gaussian: Difference between revisions
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* bash script to read a gaussian output and convert in to a xyz file. Use it to see big optimizations in molden (molden cannot read output files properly sometimes). It contains the energy profile but not the convergence criteria. [[gaussian2molden]] | * bash script to read a gaussian output and convert in to a xyz file. Use it to see big optimizations in molden (molden cannot read output files properly sometimes). It contains the energy profile but not the convergence criteria. [[gaussian2molden]] | ||
* | * Bash script is written to quickly gather information on gaussian calculations. It associates fileName// path// Last time the file has been updated // how many steps have been done // Optimisation status. // Frequency status // Vectors calc. status. // Normal termination status// Errors // Convergence status // average step duration // number of processors used. // Memory used. // Version of Gaussian used. // TS calculation ? // JobID (on qs system) // Number of atoms // SCF cycles done in the last step. Download: [[Big Brother]] (run only from kimik2 otherwise it's too slow). Example: | ||
fileName Idle Step opt Freq vect OK Err MaxF RMSF MaxS RMSS pr avg memory G? TS Mod JobID now N.At SCF | |||
01 a_0.out 3031.9 50 OK OK OK 3 1 YES YES 0.3 YES 4 165. 7000MB 9A2 0 0 214 11 | |||
02 a_0_X3.out 2717.3 7 - - - 1 0 - - - - 4 34.7 7000MB 9A2 0 0 214 16 | |||
03 a_0_solv.out 1088.8 1 - - - 1 1 - - - - 4 599. 3500MB 9A2 0 0 214 22 | |||
Revision as of 14:04, 5 September 2013
go back to Main Page, Group Pages, Feliu Maseras and Group, Computational Resources, Scripts,
- AWK script to get the energies of a Gaussian output.
- AWK and cshell/bash scripts to move from a Macromodel conformational search to inputs for Gaussian. Macromodel_to_gaussian
- Bash script to extract basic information about a gaussian job, like basis/method, symmetry, SCF energies, Convergence, Frequency info, No. of Negative eigenvalues etc. si
- bash script to read a gaussian output and convert in to a xyz file. Use it to see big optimizations in molden (molden cannot read output files properly sometimes). It contains the energy profile but not the convergence criteria. gaussian2molden
- Bash script is written to quickly gather information on gaussian calculations. It associates fileName// path// Last time the file has been updated // how many steps have been done // Optimisation status. // Frequency status // Vectors calc. status. // Normal termination status// Errors // Convergence status // average step duration // number of processors used. // Memory used. // Version of Gaussian used. // TS calculation ? // JobID (on qs system) // Number of atoms // SCF cycles done in the last step. Download: Big Brother (run only from kimik2 otherwise it's too slow). Example:
fileName Idle Step opt Freq vect OK Err MaxF RMSF MaxS RMSS pr avg memory G? TS Mod JobID now N.At SCF 01 a_0.out 3031.9 50 OK OK OK 3 1 YES YES 0.3 YES 4 165. 7000MB 9A2 0 0 214 11 02 a_0_X3.out 2717.3 7 - - - 1 0 - - - - 4 34.7 7000MB 9A2 0 0 214 16 03 a_0_solv.out 1088.8 1 - - - 1 1 - - - - 4 599. 3500MB 9A2 0 0 214 22