EXAFS: Difference between revisions
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==Processing== | ==Processing== | ||
Run sequentially these commands on a terminal; [[feff]] must be already installed. More information can be found in ''INSTALL.md'', inside the ''feff85exafs-master'' folder. | |||
feff8l_rdinp | |||
feff8l_pot | |||
feff8l_xsph | |||
feff8l_pathfinder | |||
feff8l_genfmt | |||
feff8l_ff2x | |||
==Post-processing== | ==Post-processing== | ||
Revision as of 12:58, 28 February 2019
go back to Main Page, Group Pages, Núria López and Group, Scripts_for_VASP, Computational Resources
Data Analysis
Setting up
Install feff. Follow the link for the instructions.
Install the full 'Demeter' package, that includes the 'Athena' program. It only works well in Windows 64-bits.
Pre-processing
Processing
Run sequentially these commands on a terminal; feff must be already installed. More information can be found in INSTALL.md, inside the feff85exafs-master folder.
feff8l_rdinp feff8l_pot feff8l_xsph feff8l_pathfinder feff8l_genfmt feff8l_ff2x
Post-processing
These steps should be followed in Athena, from your Virtual machine.
- Open Athena.
- Import chi.dat.
- Select chi(k) as data type.
- Click in "replot".
- Select the element and edge. (i.e., Pd, K-edge).
- Edit k-range [3.0;14.0], dK=1.
- Select plotting k-weights: 3.
- Apply a forward Fourier transform.
- Change plot to R-space, Magnitude-Magnitude. Select and unselect "real part" to update the graph. This will generate a plot |chi(R)| in Å^(-4) as a function of the radial distance in Å.
- To change the units of chi(R), change the k-weights.
- In the main window, clic on file > save current group as > chi(R).
- Save the file as .dat inside your Windows virtual machine. Then move to the shared folder to do the analysis.
- You can now do a fancy plot in Origin, showing the chi(R) data you got from Athena.